}

Bacteria Associated with Symptoms (Citizen Science)

The tables below were determined from results detected by Symptom Explorer and then recorded to the database. Second are Conditions, which are the bacteria counts reported as abnormal by studies. If a strain was detected as significant, then we included its parents(genus,family,order,class, phylum) in the count.

These bacteria are shifted in some manner (may be high, low, or just shifted). The purpose is to attempt to identify what bacteria that seems most associated with poor health. The number is the number of times it was reported in studies or in Explorer. It is not a count of the bacteria.

tax_name

tax_name Tax_rank Symptom References Condition References
Acidobacteriia   class   492   1847
Actinobacteria   class     2
Alphabacteria   class   133   507
Anaerolineae   class     2
Bacilli   class   1022   3205
Bacteroidetes   class   3485   19223
Bacteroidia   class   2535   7802
Clostridia   class   13716   69467
Coriobacteriia   class   994   4482
Erysipelotrichia   class   606   3832
Fibrobacteria   class   551   1777
Flavobacteriia   class   34   45
gamma proteobacteria   class   706   2577
Ignavibacteria   class   65   120
Lentisphaeria   class   36   105
Mollicutes   class   6   5
Negativicutes   class   433   1437
Sphingobacteriia   class   113   290
Synergistia   class   20   100
Tissierellia   class   82   385
Verrucomicrobiae   class   388   1317
Acidaminococcaceae   family   60   112
Actinomycetaceae   family   30   62
Aerococcaceae   family     2
Akkermansiaceae   family   128   190
alpha-4 proteobacteria   family   45   47
Anaerolineaceae   family     2
Atopobiaceae   family   2  
Bacillaceae   family   39   30
Bacteroidaceae   family   2031   4599
beta-1 subgroup   family     2
Bifidobacteriaceae   family   53   51
Bradyrhizobiaceae   family   63   68
Campylobacter group   family     2
Carnobacteriaceae   family     3
Catabacteriaceae   family     3
Christensenellaceae   family   13   7
Clostridiaceae   family   123   121
Clostridiales Family XIII. Incertae Sedis   family   34   10
Clostridiales Family XV. Incertae Sedis   family   10   10
Clostridiales incertae sedis   family   171   170
Coriobacteriaceae   family   158   328
Corynebacteriaceae   family     2
Desulfovibrionaceae   family   650   788
Eggerthellaceae   family   349   490
Enterobacteraceae   family   247   425
Enterobacteriaceae   family   1  
Enterococcaceae   family     2
Erysipelotrichaceae   family   1  
Eubacteriaceae   family   170   193
Flavobacteriaceae   family   1  
Hungateiclostridiaceae   family   60   60
Lachnospiraceae   family   4045   7831
Lactobacillaceae   family   136   99
Melioribacteraceae   family   4  
Methylobacteriaceae   family     2
Micrococcaceae   family   90   90
Neisseriaceae   family     2
Nocardiaceae   family     2
Odoribacteraceae   family   279   422
Oscillospiraceae   family   95   73
Oxalobacteraceae   family   49   20
Paenibacillaceae   family   6  
Pasteurellaceae   family   13   29
Peptococcaceae   family   4   2
Peptoniphilaceae   family   46   75
Peptostreptococcaceae   family   271   273
Porphyromonadaceae   family   64   97
Prevotellaceae   family   47   85
Pseudomonadaceae   family     3
Rhodocyclaceae   family   558   1103
Rikenellaceae   family   395   904
Ruminococcaceae   family   3061   4200
Sphingobacteriaceae   family   17   10
Staphylococcaceae   family     2
Streptococcaceae   family   51   98
Sutterellaceae   family   119   279
Tannerellaceae   family   66   140
Tissierellaceae   family     3
Verrucomicrobiaceae   family     3
Victivallaceae   family   7   5
Abiotrophia   genus     2
Acetigenium   genus     2
Acetivibrio   genus   10   2
Acetobacteroides   genus     2
Acidaminococcus   genus     4
Acinetobacter   genus     2
Actinobacillus   genus     3
Actinomadura   genus   918   906
Actinomyces   genus     4
Adlercreutzia   genus   6   10
Aeriscardovia   genus     2
Aerococcus   genus     2
Aestuariispira   genus     2
Akkermansia   genus   38   39
Alistipes Rautio et al. 2003   genus   179   186
Allobaculum   genus     2
Anaerobacter   genus   6   25
Anaerococcus   genus   5   2
Anaerocolumna   genus   1  
Anaerofilum   genus   10  
Anaerofustis   genus   6   7
Anaeroplasma   genus     2
Anaerosporobacter   genus   40   35
Anaerostipes   genus   47   25
Anaerotignum   genus   35   35
Anaerotruncus   genus   14   7
Atopobium   genus     3
Atopostipes   genus     2
Aurococcus   genus     12
Bacillus   genus   6   2
Bacillus polymyxa group   genus     2
Bacteroides   genus   2   4
Bariatricus   genus     4
Barnesiella   genus     3
Bifidobacterium   genus     3
Bilophila   genus   24   29
Blautia   genus   205   215
Bulleidia   genus     2
Butyricicoccus   genus   15   4
Butyricimonas   genus   78   61
Butyrivibrio   genus   1   2
Calditerricola   genus     6
Caloramator   genus     2
Campylobacter   genus     5
Candida   genus     2
Candidatus Soleaferrea   genus     2
Carnibacterium   genus     2
Caseobacter   genus     5
Catenibacterium   genus     5
Cellulosibacter   genus     2
Cellulosilyticum   genus     2
Cetobacterium   genus     3
Christensenella   genus     3
Cloacibacillus   genus   2  
Clostridioides   genus   6   5
Clostridium   genus   18   2
Collinsella   genus   65   70
Coprobacillus   genus     6
Coprococcus   genus     15
Coriobacterium   genus     2
Cronobacter   genus     2
Dehalobacterium   genus     4
Desulfovibrio   genus   133   74
Dialister   genus   7   16
Dielma   genus   70   67
Discomyces   genus   2   3
Dorea   genus   421   415
Edwardsiella   genus     2
Eggerthella   genus   34   31
Eisenbergiella   genus   20   17
Enhydrobacter   genus     2
Enterococcus   genus     17
Erwinia   genus     2
Erysipelatoclostridium   genus   57   54
Escherichia   genus     9
Eubacterium   genus   32   17
Facklamia   genus     2
Faecalibacterium   genus   353   236
Faecalicatena   genus   5   5
Faecalitalea   genus   7   8
Filifactor   genus   1  
Finegoldia   genus   10   10
Flavobacterium   genus     3
Flavonifractor   genus   39   34
Fusibacterium   genus     8
Fusicatenibacter   genus   179   142
Fusobacterium   genus   25  
Gemella   genus     4
Geosporobacter   genus     2
Gordonibacter   genus   15   15
Granulicatella   genus     2
Haemophilus   genus   5   15
Hafnia   genus     2
Herbaspirillum   genus   4  
Hespellia   genus   12  
Holdemanella   genus     2
Holdemania   genus   85   60
Hungatella   genus   2  
Hyphomicrobium   genus     2
Intestinibacter   genus   6  
Intestinimonas   genus   35   3
Jonquetella   genus     2
Kluyvera   genus   78   65
Lachnoclostridium   genus   60   53
Lachnospira   genus   290   202
Lactobacillus   genus     5
Lactococcus   genus     3
Leptotrichia   genus     3
Megamonas   genus     3
Megasphaera   genus   3   4
Methanobrevibacter   genus     5
Methylobacterium   genus     2
Micromonas   genus     4
Mitsuokella   genus     2
Mogibacterium   genus   2   2
Morganella   genus     2
Moryella   genus   22  
Mycobacterium   genus     3
Mycoplasma   genus     2
Novispirillum   genus     2
Odoribacter   genus   6   8
Olsenella   genus     2
Oribacterium   genus   4  
Oscillibacter   genus   14   8
Oscillospira   genus   52   4
Oxalobacter   genus     2
Paenibacillus   genus   19   32
Papillibacter   genus   29  
Parabacteroides   genus   28   42
Paraprevotella   genus   11   13
Parasutterella   genus     4
Pedobacter   genus   2   2
Peptoclostridium   genus   25  
Peptoniphilus   genus     3
Peptostreptococcus   genus     8
Phascolarctobacterium   genus   22   26
Porphyromonas   genus   18   17
Prescottia   genus     3
Prevotella   genus   4   33
Propionibacterium   genus     3
Proteiniborus   genus     2
Providencia   genus     2
Pseudobutyrivibrio   genus   11   5
Pseudoflavonifractor   genus   54   37
Ralstonia   genus     2
Raoultella   genus     2
Robinsoniella   genus   7   5
Romboutsia   genus   2   3
Roseburia   genus   173   162
Ruminiclostridium   genus   12   3
Ruminococcus   genus   1   6
Ruthenibacterium   genus   2  
Salmonella   genus   1   3
Sarcina   genus     3
Scardovia   genus     2
Schaalia   genus   10   10
Shigella   genus     7
Slackia   genus   43   7
Soleaferrea   genus   6   2
Solobacterium   genus     2
Sphingomonas Yabuuchi et al. 1990 emend. Yabuuchi et al. 2002   genus   9   2
Sporobacter   genus   1  
Streptococcus   genus   19   28
Subdoligranulum   genus   265   128
Succinatimonas   genus     2
Succinivibrio   genus     2
Sutterella   genus   55   62
Syntrophococcus   genus   3  
Terrisporobacter   genus   14  
Thermus   genus     2
Tissieria   genus   9   38
Treponema   genus     2
Turicibacter   genus     9
Tyzzerella   genus     2
Ulvina   genus     2
Vagococcus   genus     2
Vampirovibrio   genus     2
Veillonella   genus   2   10
Vibrio   genus     2
Victivallis   genus   1  
Weissella   genus     4
Bacillales Family XI. Incertae Sedis   no_rank   1  
Bacillales incertae sedis   no_rank   5   5
Chlamydiae/Verrucomicrobia group   no_rank   470   2475
FCB group   no_rank   1835   11405
Terrabacteria group   no_rank   5430   56630
unclassified Clostridiales   no_rank   212   175
Acholeplasmatales   order   1  
Acidaminococcales   order   111   300
Actinomycetales   order   49   153
Anaerolineales   order     2
Anaeroplasmatales   order     2
Bacillales   order   153   250
Bacteroidales   order   3844   14415
Bifidobacteriales   order   137   267
Burkholderiales   order   355   845
Caulobacterales   order     2
Clostridiales   order   13892   41135
Coriobacteriales   order   263   810
Cytophagales   order     2
Desulfovibrionales   order   1560   3252
Eggerthellales   order   633   1745
Enterobacterales   order   484   1237
Erysipelotrichales   order   766   2792
Flavobacteriales   order   9   5
Ignavibacteriales   order   24   20
Lactobacillales   order   488   937
Micrococcales   order   180   450
Pasteurellales   order   31   65
Propionibacteriales   order   1  
Rhizobiales   order     4
Rhodospirillales   order   11   5
Selenomonadales   order     2
Sphingobacteriales   order   58   85
Sphingomonadales   order   90   225
Synergistales   order   20   50
Tissierellales   order   77   230
Veillonellales   order   176   315
Verrucomicrobiales   order   263   643
Victivallales   order   21   35
Actinobacteria   phylum   1310   7445
Bacillaeota   phylum   10001   79321
Bacteroidetes   phylum   28   103
Balneolaeota   phylum   1  
Chloroflexaeota   phylum     2
Chloroflexi   phylum     2
Cyanobacteria   phylum     4
Fibrobacteres   phylum   4593   22691
Firmicutes   phylum   15  
Fusobacteraeota   phylum     7
Fusobacteria   phylum   15   33
Gemmatimonadetes   phylum   2806   18175
Ignavibacteriae   phylum   110   325
Lentisphaerae   phylum   41   185
Proteobacteria   phylum   454   1946
Spirochaetae   phylum     2
[Clostridium] aldenense   species   31   4
[Clostridium] bolteae   species     3
[Clostridium] caenicola   species     2
[Clostridium] fimetarium   species     4
[Clostridium] scindens   species     4
Abiotrophia adiacens   species     2
Acetanaerobacterium elongatum   species     2
Acinetobacter calcoaceticus/baumannii complex   species     2
ACM 3611   species     2
Adlercreutzia equolifaciens   species   1   3
Aerobacter aerogenes   species     2
AIP 26.04   species   1  
Akkermansia muciniphila   species   5   14
Alistipes finegoldii   species   5   2
Alistipes indistinctus   species   8  
Alistipes massiliensis   species     2
Alistipes putredinis   species   14   2
Alistipes shahii   species   1  
Alistipes sp. EBA6-25cl2   species   1  
Alistipes sp. NML05A004   species   5  
Anaerofustis stercorihominis   species   1  
Anaeromassilibacillus senegalensis   species     2
Anaerosporobacter mobilis   species   7  
Anaerostipes hadrus   species     2
Anaerostipes sp. 494a   species   1  
Anaerostipes sp. 5_1_63FAA   species   2  
Anaerotruncus colihominis   species   1  
AS 1.2197   species     2
ATCC 11741   species     3
ATCC 17744   species     2
ATCC 17929   species   2  
ATCC 27753   species     2
ATCC 27758   species     3
ATCC 33277   species     2
ATCC 33323   species     2
ATCC 33539   Species     2
ATCC 35469   species     2
ATCC 43504   species     2
ATCC 43585   species     2
ATCC 49124   Species     2
ATCC 49456   species     2
ATCC 49540   species     2
ATCC 51603   species   13  
ATCC 51649   species   12  
ATCC 6223   species     7
ATCC BAA-1180   species   1  
ATCC BAA-1383   species     2
ATCC BAA-1629   species   2  
Bacillus coagulans   species     2
Bacteroides caccae   species   18  
Bacteroides coprocola   species     2
Bacteroides coprophilus   species     2
Bacteroides faecis   species   1  
Bacteroides finegoldii   species   9   2
Bacteroides fragilis   species   3   13
Bacteroides fragilis   species     4
Bacteroides massiliensis   species   1  
Bacteroides nordii   species   6  
Bacteroides ovatus   species     6
Bacteroides salyersiae   species   11  
Bacteroides sp.   species   4  
Bacteroides sp. AN 5745   species   1   4
Bacteroides sp. AR20   species   2  
Bacteroides sp. EBA5-17   species   2  
Bacteroides sp. J1511   species   1  
Bacteroides sp. SLC1-38   species   1  
Bacteroides stercoris   species   1   3
Bacteroides vulgatus   species   52   8
Bifidobacterium animalis   species     3
Bifidobacterium bifidum   species     4
Bifidobacterium longum   species     8
Bifidobacterium pseudocatenulatum   species     3
Bifidobacterium pseudolongum   species     3
Bifidobacterium pseudolongum   species     2
Bilophila wadsworthia   species   4  
Blautia coccoides   species     2
Blautia faecis   species   5   3
Blautia hydrogenotrophica   species     2
Blautia luti   species   16  
Blautia obeum   species     3
Blautia sp. GAM6-1   species   1  
Blautia sp. YHC-4   species   10  
Blautia wexlerae   species   2  
Butyricicoccus desmolans   species     2
Butyricicoccus pullicaecorum   species     2
Butyricimonas faecihominis   species   4  
Butyricimonas sp. 214-4   species   6  
Butyricimonas virosa   species   1   2
Butyrivibrio fibrisolvens   species     2
Candida   species     2
CCM 169   species     2
CCUG 43179   species     2
CCUG 47026   species     2
CCUG 47620   species   7  
CCUG 51858   species     2
CCUG 55131   species   3  
CCUG 55407   species     3
CIPP II   species     2
Clostridiales bacterium 1_7_47FAA   species     3
Clostridiales bacterium L2-14   species     3
Clostridiales bacterium Sjm18-20   species     2
Clostridioides difficile   species   1   2
Clostridium clostridioforme   species     2
Clostridium colinum   species     2
Clostridium innocuum   species     2
Clostridium lactatifermentans   species   7  
Clostridium leptum   species     5
Clostridium saccharolyticum   species   4  
Clostridium sp.   species     5
Clostridium symbiosum   species   6   3
Collinsella aerofaciens   species   12  
Coprococcus catus   species     4
Coprococcus eutactus   species     3
Corynebacterium fusiforme   species     4
Desulfovibrio desulfuricans   species     2
Desulfovibrio piger   species   12  
Dielma fastidiosa   species   13  
Dorea formicigenerans   species   78   4
Dorea longicatena   species   3   4
DSM 16840   species   19   2
DSM 18205   species     10
DSM 23940   species   7   3
DSM 24301   species     2
DSM 8324   species     2
Eggerthella lenta   species   5   6
Eisenbergiella tayi   species     2
Enterobacter hafniae   species     2
Enterococcus faecalis   species     4
Enterococcus faecium   species     2
Erysipelatoclostridium ramosum   species   10   2
Eubacterium coprostanoligenes   species   2  
Eubacterium eligens   species     3
Eubacterium hallii   species     6
Eubacterium ruminantium   species   32   6
Eubacterium siraeum   species     3
Faecalibacterium prausnitzii   species   30   18
Faecalibacterium sp. canine oral taxon 147   species   12  
Faecalicatena orotica   species   1  
Faecalitalea cylindroides   species   1  
Fibrobacter succinogenes   species     2
Flavonifractor plautii   species   6   2
Fusicatenibacter saccharivorans   species   28  
Haemophilus parainfluenzae   species   3   2
Hungatella hathewayi   species     2
IFO 14850   species     2
JCM 1305   species     2
JCM 1766   species   2  
JCM 6325   species     2
JCM 6326   species     2
Lachnospira pectinoschiza   species   39   2
Lactobacillus rhamnosus   species     2
Lactobacillus sakei   species     2
LMG 6902   species     3
LMG:7884   species     2
LMG:8841   Species     2
Marvinbryantia formatexigens   species     16
Megamonas funiformis   species     2
Methanobrevibacter smithii   species     5
Odoribacter splanchnicus   species     2
Oscillibacter ruminantium   species     3
Parabacteroides distasonis   species   4   4
Parasutterella excrementihominis   species     2
Phascolarctobacterium faecium   species     2
Phascolarctobacterium faecium   species   4  
Photorhabdus asymbiotica   species     4
Porphyromonas crevioricanis   species     5
Pseudomonas aeruginosa group   species     2
Robinsoniella sp. KNHs210   species   1  
Roseburia intestinalis   species   8  
Roseburia intestinalis   species     2
Roseburia inulinivorans   species   3   4
Ruminococcus gnavus   species     8
Ruminococcus lactaris   species     2
Ruminococcus torques   species   1   3
Ruminococcus torques   species   6   4
Slackia piriformis   species   1  
Streptococcus anginosus   species   2  
Streptococcus pyogenes   species     2
Streptococcus salivarius   species     2
Streptococcus sp. 11aTha1   species   1  
Streptococcus sp. 2011_Oral_MS_A3   species   2  
Streptococcus thermophilus   species     2
Subdoligranulum variabile   species   25  
Sutterella sp. 252   species   4  
Sutterella wadsworthensis   species     3
Veillonella parvula   species     2
VPI 0990   Species     5
VPI 3266   species     3
Xanthomonas maltiphilia   species     3
Actinobacteridae   subclass   1  
Coriobacterineae   suborder   2  
delta/epsilon subdivisions   subphylum   3143   12675
Bacteroidetes/Chlorobi group   superphylum   2266   14585

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