Bacteria Associated with Symptoms (Citizen Science)

The tables below were determined from results detected by Symptom Explorer and then recorded to the database. Second are Conditions, which are the bacteria counts reported as abnormal by published studies. If a strain was detected as significant, then we included its parents(genus,family,order,class, phylum) in the count.

These bacteria are shifted in some manner (may be high, low, or just shifted). The purpose is to attempt to identify what bacteria that seems most associated with poor health. The number is the number of times it was reported in studies or in Explorer. It is not a count of the bacteria.

Association of Taxa with Symptoms or Conditions

Tax_rank tax_name Symptom References Condition References
  class Acidobacteriia   140   498
Alphaproteobacteria   36   52
Anaerolineae     2
Bacilli   724   2316
Bacteroidia   2218   12136
Betaproteobacteria   200   597
Chloroflexia     3
Clostridia   8309   42893
Coriobacteriia   396   1874
Deltaproteobacteria   1567   5182
Dothideomycetes     2
Erysipelotrichia   271   1807
Flavobacteriia   28   40
Fusobacteriia     2
Gammaproteobacteria   516   1932
Kiritimatiellae     3
Lentisphaeria   36   105
Mollicutes   1  
Negativicutes   320   1057
Spirochaetia     2
Tissierellia   10   100
Verrucomicrobiae   238   917
  family Acidaminococcaceae   43   88
Actinomycetaceae   20   52
Aerococcaceae     2
Akkermansiaceae   102   160
Anaerolineaceae     2
Atopobiaceae     3
Bacteroidaceae   1407   3153
Barnesiellaceae     4
Bifidobacteriaceae   32   36
Burkholderiaceae     2
Campylobacteraceae     2
Candidatus Homeothermaceae     6
Carnobacteriaceae     3
Catabacteriaceae     3
Christensenellaceae     10
Clostridiaceae   20   26
Clostridiales Family XIII. Incertae Sedis   27   10
Clostridiales incertae sedis   125   135
Comamonadaceae     2
Coriobacteriaceae   31   44
Corynebacteriaceae     2
Dermabacteraceae     2
Desulfobulbaceae     3
Desulfovibrionaceae   476   661
Eggerthellaceae   181   291
Elusimicrobiaceae     3
Enterobacteriaceae   196   353
Enterococcaceae     2
Erysipelotrichaceae   282   607
Eubacteriaceae   3   3
Flavobacteriaceae   1  
Hungateiclostridiaceae   5   5
Lachnospiraceae   2692   5159
Lactobacillaceae   130   94
Methylobacteriaceae     2
Neisseriaceae     2
Nocardiaceae     2
Odoribacteraceae   149   232
Oscillospiraceae   52   60
Oxalobacteraceae   12   10
Paludibacteraceae     5
Pasteurellaceae   1   4
Peptococcaceae   3   6
Peptoniphilaceae   20   50
Peptostreptococcaceae   156   154
Porphyromonadaceae   25   62
Prevotellaceae   16   26
Pseudomonadaceae     3
Rhodospirillaceae   1  
Rikenellaceae   201   478
Ruminococcaceae   2028   2967
Sphingomonadaceae     2
Staphylococcaceae     2
Streptococcaceae   46   93
Sutterellaceae   48   104
Tannerellaceae Ormerod et al. 2016   30   62
Tissierellaceae     3
Veillonellaceae   48   58
Verrucomicrobiaceae     3
Victivallaceae   7   5
  genus Abiotrophia     6
Acetigenium     2
Acetivibrio     2
Acetobacteroides     2
Acidaminococcus     7
Acidipropionibacterium     2
Acinetobacter     3
Actinobacillus     4
Actinomyces     8
Actinopolyspora     2
Adlercreutzia   6   11
Aeriscardovia     2
Aerococcus     2
Aeromonas     2
Aestuariispira     2
Agathobacter     6
Aggregatibacter     3
Agromonas     3
Akkermansia   32   44
Alistipes   93   112
Allobaculum     3
Alloprevotella     3
Alloscardovia     3
Anaerococcus     5
Anaerofilum   1  
Anaerofustis     2
Anaeroglobus     3
Anaeromassilibacillus     3
Anaeroplasma     3
Anaerosporobacter   23   20
Anaerostipes   35   19
Anaerotruncus   13   11
Angelakisella     4
Atopobium     7
Atopostipes     2
Bacillus     4
Bacillus     5
Bacteroides   628   641
Barnesiella     5
Bifidobacterium   6   51
Bilophila   24   32
Bittarella     2
Blautia   119   139
Bulleidia     2
Burkholderia     5
Butyricicoccus     9
Butyricimonas   42   38
Butyrivibrio   1   3
Caloramator     2
Campylobacter     8
Candida     2
Candidatus Homeothermus     5
Candidatus Soleaferrea   3   2
Candidatus Soleaferrea     3
Candidatus Stoquefichus     4
Capnocytophaga     4
Cardiobacterium     4
Carnobacterium     2
Catenibacterium     5
Cellulosibacter     2
Cellulosilyticum     2
Centipeda     4
Centipeda     4
Cetobacterium     4
Christensenella     4
Chryseobacterium     3
Cloacibacterium     2
Clostridium   3   37
Collinsella   8   22
Coprobacillus     9
Coprobacter     3
Coprococcus     20
Coriobacterium     2
Corynebacterium     9
Criibacterium     3
Cronobacter     2
Cryptobacterium     3
Cutibacterium     3
Dehalobacterium     4
Deinococcus     2
Desulfovibrio   107   78
Dialister   6   21
Dielma   25   27
Dorea   321   327
Dysgonomonas     2
Edwardsiella     2
Eggerthella   26   29
Eggerthia     2
Eikenella     2
Eisenbergiella   13   12
Emergencia     5
Enhydrobacter     2
Enterobacter     10
Enterococcus     32
Erwinia     2
Erysipelatoclostridium   44   50
Escherichia     16
Eubacterium     16
Facklamia     2
Faecalibacterium   290   217
Faecalibaculum     2
Faecalicoccus     2
Faecalitalea     3
Finegoldia   10   12
Flavobacterium     4
Flavonifractor   33   32
Fournierella     5
Fretibacterium     3
Fusicatenibacter   122   102
Fusobacterium     16
Gardnerella     2
Gemella     8
Geosporobacter     2
Gordonibacter   10   15
Granulicatella     6
Haemophilus     16
Hafnia     2
Helicobacter     2
Herbaspirillum   2  
Hespellia   10  
Holdemanella     4
Holdemania   50   44
Hyphomicrobium     2
Intestinibacter   5   4
Intestinimonas   16   5
Johnsonella     4
Jonquetella     2
Klebsiella     13
Kluyvera   66   55
Lachnoanaerobaculum     4
Lachnoclostridium     4
Lachnospira   191   123
Lactobacillus   18   42
Lactococcus     4
Lactosphaera     2
Lautropia     2
Lawsonella     2
Leclercia     2
Leptotrichia     8
Leucobacter     2
Levyella     2
Libanicoccus     3
Marvinbryantia   18   3
Massilioclostridium     3
Megamonas     6
Megasphaera   3   9
Merdibacter     5
Methanobrevibacter     8
Methylobacterium     2
Microbacterium     3
Mitsuokella     4
Mogibacterium   2   6
Moraxella     2
Morganella     2
Moryella   12  
Murdochiella     2
Mycobacterium     3
Mycoplasma     2
Neglecta     4
Neisseria     8
Nissabacter     2
Novispirillum     2
Odoribacter   4   12
Olsenella     6
Oribacterium     5
Oscillibacter   10   14
Oscillospira   41   5
Ottowia     3
Oxalobacter     5
Pachytichospora     2
Paenibacillus     3
Pantoea     2
Papillibacter   1  
Parabacteroides   12   33
Paraburkholderia     2
Paraprevotella     6
Parascardovia     2
Parasutterella     5
Parvimonas     7
Pediococcus     2
Pedobacter     2
Peptoclostridium   17  
Peptoniphilus     6
Peptostreptococcus     12
Phascolarctobacterium   16   24
Phocea     3
Porphyromonas   11   23
Prescottia     4
Prevotella   3   47
Prevotellamassilia     5
Propionibacterium     5
Proteiniborus     2
Proteus     6
Providencia     2
Pseudobutyrivibrio   7   5
Pseudoflavonifractor   30   31
Pseudomonas     11
Pseudopropionibacterium     3
Pseudoramibacter     2
Psychrobacillus     2
Ralstonia     2
Raoultella     5
Rhodococcus     2
Robinsoniella     2
Romboutsia   2   9
Roseburia   152   160
Rothia     7
Rothia     6
Ruminiclostridium   1   8
Ruminococcus     17
Ruthenibacterium     5
Salmonella     3
Sarcina     3
Scardovia     4
Schaalia   10   10
Selenomonas     2
Sellimonas     5
Senegalimassilia     3
Shigella     13
Shuttleworthia     4
Siccibacter     2
Slackia   15   4
Solobacterium     5
Sphingobacterium     2
Sphingomonas     2
Sporobacter   1   2
Staphylococcus     16
Stomatobaculum     4
Streptococcus   18   43
Subdoligranulum   174   98
Succinatimonas     3
Succiniclasticum     2
Succinivibrio     4
Sutterella   20   34
Syntrophomonas     2
Tannerella     3
Terrisporobacter   6   2
Thermus     2
Treponema     2
Turicibacter     10
Tyzzerella     4
Ulvina     2
Vagococcus     2
Vampirovibrio     2
Varibaculum     3
Variovorax     3
Veillonella   1   16
Vibrio     2
Victivallis   1  
Weissella     6
  no rank Campylobacter concisus 13826     2
Haemophilus influenzae 10810     2
  no_rank Chlamydiae/Verrucomicrobia group   364   1645
FCB group   1195   7195
Terrabacteria group   3212   32890
unclassified Clostridiales   116   80
  order Acholeplasmatales     2
Acidaminococcales   81   215
Actinomycetales   25   103
Agaricales     2
Anaerolineales     2
Anaeroplasmatales     2
Bacillales   3  
Bacteroidales   2426   9150
Bifidobacteriales   72   162
Burkholderiales   119   300
Caulobacterales     2
Clostridiales   8575   26011
Coriobacteriales   79   160
Cytophagales     2
Desulfovibrionales   1036   2382
Eggerthellales   295   905
Enterobacterales   379   982
Erysipelotrichales   361   1412
Flavobacteriales   8   11
Lactobacillales   459   882
Opitutales     5
Pasteurellales   7   5
Pseudomonadales     4
Rhodospirillales   10   5
Selenomonadales     3
Tissierellales   20   100
Veillonellales   130   240
Verrucomicrobiales   183   513
Victivallales   21   35
  phylum Actinobacteria   474   2697
ascomycetes     2
Bacteroidetes   1778   11245
basidiomycetes     2
Chloroflexi     2
Cyanobacteria     5
Euryarchaeota     2
Firmicutes   6099   48197
Firmicutes     3
Fusobacteraeota     8
Lentisphaerae   41   185
Proteobacteria   2732   13143
Spirochaetae     3
Synergistetes     3
Tenericutes   5   8
Verrucomicrobia   288   1200
  species [Bacteroides] coagulans     2
[Bacteroides] pectinophilus     4
[Clostridium] alkalicellulosi     2
[Clostridium] asparagiforme     2
[Clostridium] bolteae     6
[Clostridium] citroniae     2
[Clostridium] citroniae     3
[Clostridium] cocleatum     2
[Clostridium] colinum     2
[Clostridium] glycyrrhizinilyticum     3
[Clostridium] hiranonis     3
[Clostridium] hylemonae     2
[Clostridium] innocuum     5
[Clostridium] leptum     7
[Clostridium] methylpentosum     4
[Clostridium] scindens     6
[Clostridium] spiroforme     2
[Clostridium] spiroforme     3
[Clostridium] symbiosum     8
[Eubacterium] brachy     2
[Eubacterium] dolichum     2
[Eubacterium] eligens     6
[Eubacterium] hallii     7
[Eubacterium] infirmum     2
[Eubacterium] rectale     8
[Eubacterium] saphenum     2
[Eubacterium] siraeum     4
[Hallella] seregens     4
[Ruminococcus] gnavus     11
[Ruminococcus] torques     9
Abiotrophia adiacens     5
Abiotrophia defectiva     3
Abiotrophia sp.     4
Acetanaerobacterium elongatum     2
Acetivibrio ethanolgignens     2
Achromobacter georgiopolitanum     2
Acidaminococcus fermentans     3
Acidaminococcus intestini     5
Acidaminococcus sp.     4
Acidivorax temperans     3
Acidovorax sp. 121606     2
Acinetobacter baumannii     3
Acinetobacter calcoaceticus/baumannii complex     2
Acinetobacter genomosp. 5     2
Acinetobacter soli     2
Acinetobacter sp.     3
ACM 3611     5
Actinobacterium israeli     4
Actinobaculum massiliense     2
Actinomyces cardiffensis     4
Actinomyces dentalis     4
Actinomyces eriksonii     4
Actinomyces gerencseriae     4
Actinomyces graevenitzii     5
Actinomyces hongkongensis     4
Actinomyces johnsonii     4
Actinomyces massiliensis     3
Actinomyces naeslundii     5
Actinomyces naeslundii genospecies 2     4
Actinomyces odontolyticus   2  
Actinomyces radicidentis     3
Actinomyces sp.     5
Actinomyces timonensis     4
Actinomyces turicensis     2
Actinomyces viscosus     3
Acuformis perennis     2
Adlercreutzia equolifaciens   1   4
Adlercreutzia sp.     2
Aerobacter aerogenes     4
Aerococcus christensenii     2
Aeromonas shigelloides     4
Agathobaculum butyriciproducens     4
Aggregatibacter actinomycetemcomitans     2
Aggregatibacter aphrophilus     2
Aggregatibacter segnis     3
Agrobacterium pusense     2
AHU 1763     2
Akkermansia muciniphila   4   19
Akkermansia sp.     5
Alcaligenes sp. (strain BR60)     2
Alistipes finegoldii   2   5
Alistipes indistinctus   4   4
Alistipes obesi     2
Alistipes onderdonkii     5
Alistipes putredinis   10   5
Alistipes senegalensis Mishra et al. 2012     2
Alistipes shahii   1   3
Alistipes sp.     5
Alistipes sp. EBA6-25cl2   1  
Alistipes timonensis     4
Allisonella histaminiformans     3
Allobaculum sp. Alo17     2
Alloprevotella rava     5
Alloprevotella tannerae     2
Alloscardovia omnicolens     3
Anaerobacillus macyae (Santini et al. 2004) Zavarzina et al. 2009     2
Anaerococcus obesiensis     2
Anaerococcus octavius     2
Anaerococcus prevotii     2
Anaerococcus sp.     3
Anaerococcus vaginalis     3
Anaerocolumna aminovalerica     2
Anaerofustis stercorihominis     2
Anaeroglobus geminatus     3
Anaeroglobus sp.     2
Anaeromassilibacillus senegalensis     2
Anaeromassilibacillus sp.     3
Anaerosporobacter mobilis   4   3
Anaerostipes caccae     5
Anaerostipes hadrus     6
Anaerostipes sp.     6
Anaerostipes sp. 5_1_63FAA   2  
Anaerotruncus colihominis   1   3
Anaerotruncus sp.     3
Anaerovibrio sp.     2
Aquaspirillum dispar     2
AS 1.2280     3
ATCC 10014     2
ATCC 10558     4
ATCC 13146 [[Leuconostoc amelibiosum Schillinger et al. 1989]]     5
ATCC 15483     2
ATCC 25258     3
ATCC 25611     3
ATCC 27570     2
ATCC 27780     2
ATCC 29062     2
ATCC 29237     4
ATCC 29935     2
ATCC 33028     3
ATCC 33072     3
ATCC 33110     3
ATCC 33199     2
ATCC 33241     2
ATCC 33257     2
ATCC 33313     2
ATCC 35037     4
ATCC 35046     2
ATCC 35313 [[Koserella trabulsii Hickman-Brenner et al. 1985]]     2
ATCC 35469     4
ATCC 35536     2
ATCC 35539     2
ATCC 43541     3
ATCC 43838     2
ATCC 43921     2
ATCC 43994     3
ATCC 49062     3
ATCC 49124     5
ATCC 49372     2
ATCC 49427     3
ATCC 49559     2
ATCC 49833     2
ATCC 49918     4
ATCC 51112     2
ATCC 51114     3
ATCC 51146     2
ATCC 51147     3
ATCC 51230     2
ATCC 51266     2
ATCC 51502     3
ATCC 51523     2
ATCC 51767     4
ATCC 51939     2
ATCC 700018     2
ATCC 700285     3
ATCC 700332     3
ATCC 700337     2
ATCC 700542     2
ATCC 700632     3
ATCC 700666     2
ATCC 700779     4
ATCC 700780     3
ATCC 700907     4
ATCC 7061     2
ATCC 8043     3
ATCC BAA-102     3
ATCC BAA-1200     3
ATCC BAA-1383     2
ATCC BAA-2400     4
ATCC BAA-303     4
ATCC BAA-960     4
Atlantibacter subterranea (Shelobolina et al. 2005) Hata et al. 2016     2
Atopobium parvulum     6
Atopobium rimae     4
Atopobium sp.     3
Aureobacterium sp.     3
Bacillus amylolyticus Choukevitch 1911     2
Bacillus coagulans     2
Bacillus fordii     2
Bacillus megaterium     3
Bacillus okuhidaensis     2
Bacillus pseudalcalophilus Nielsen et al. 1995     2
Bacillus simplex     2
Bacillus sp.     3
Bacteridium luteum     2
Bacterium sonnei Levine 1920     2
Bacteroides barnesiae     4
Bacteroides caccae   7   2
Bacteroides caecimuris     3
Bacteroides cellulosilyticus     4
Bacteroides clarus     4
Bacteroides coprocola     3
Bacteroides coprophilus     4
Bacteroides dorei     3
Bacteroides eggerthii     4
Bacteroides faecichinchillae     3
Bacteroides faecis     4
Bacteroides finegoldii   7   4
Bacteroides fluxus     3
Bacteroides fragilis     17
Bacteroides gallinarum     3
Bacteroides gingivalis     3
Bacteroides graminisolvens     3
Bacteroides helcogenes     4
Bacteroides intestinalis     5
Bacteroides massiliensis   1   4
Bacteroides mediterraneensis Mailhe et al. 2016     2
Bacteroides nordii   3   5
Bacteroides oleiciplenus     2
Bacteroides ovatus     8
Bacteroides paurosaccharolyticus     2
Bacteroides plebeius     2
Bacteroides pyogenes     5
Bacteroides reticulotermitis     3
Bacteroides rodentium     4
Bacteroides salanitronis     2
Bacteroides salyersiae   4   4
Bacteroides sartorii     2
Bacteroides sp.     8
Bacteroides sp. AR20   2  
Bacteroides sp. EBA5-17   2  
Bacteroides sp. JCM 17101     3
Bacteroides stercoris   1   6
Bacteroides thetaiotaomicron   30   6
Bacteroides uniformis   27   9
Bacteroides vulgatus   35   12
Bacteroides xylanisolvens     5
Barnesiella intestinihominis     3
Barnesiella viscericola     2
beta proteobacterium KSP3     2
Bifidobacterium adolescentis     6
Bifidobacterium animalis     5
Bifidobacterium bifidum     5
Bifidobacterium catenulatum     3
Bifidobacterium longum     10
Bifidobacterium pseudocatenulatum     5
Bifidobacterium pseudolongum     3
Bifidobacterium pseudolongum     5
Bifidobacterium sp.     6
Bilophila sp.     2
Bilophila wadsworthia   4   4
Blautia coccoides     3
Blautia faecis   5   3
Blautia hydrogenotrophica     4
Blautia luti   13  
Blautia obeum     5
Blautia producta     4
Blautia sp.     7
Blautia sp. YHC-4   3  
Blautia wexlerae   2  
Bradyrhizobium sp.     3
Brucella tularensis     7
Bulleidia extructa     2
Butyricicoccus desmolans     6
Butyricicoccus pullicaecorum     5
Butyricicoccus sp.     5
Butyricimonas faecihominis   3  
Butyricimonas sp.     5
Butyricimonas sp. 214-4   3  
Butyricimonas synergistica     3
Butyricimonas virosa     5
Butyrivibrio crossotus     2
Butyrivibrio fibrisolvens     2
Butyrivibrio sp.     2
Campylobacter concisus     3
Campylobacter curvus     3
Campylobacter gracilis     2
Campylobacter sp.     3
Campylobacter ureolyticus     2
Candida     2
Candidatus Bacteroides periocalifornicus McLean et al. 2015     2
Candidatus Methanomethylophilus alvus Borrel et al. 2012     2
Candidatus Prevotella conceptionensis Fenollar et al. 2006     3
Capnocytophaga gingivalis     4
Capnocytophaga leadbetteri     3
Capnocytophaga sp.     4
Capnocytophaga sputigena     3
Cardiobacterium hominis     2
Cardiobacterium sp.     4
Catabacter hongkongensis     4
Catenibacterium sp.     2
Catonella morbi     3
CAV     2
CCM 3540     2
CCM 7299     3
CCUG 353     2
CCUG 41967     4
CCUG 45296     3
CCUG 45813     2
CCUG 45998 A     2
CCUG 46149     4
CCUG 46150     2
CCUG 47503     2
CCUG 47504     2
CCUG 47505     2
CCUG 48363     3
CCUG 48456     3
CCUG 48459     2
CCUG 48460     2
CCUG 54233     6
CCUG 54362     2
CCUG 556     2
CCUG 55896     2
CCUG 57945     3
CCUG 60371     3
CCUG 64422     2
CECT 5975     4
Cetobacterium sp.     2
Christensenella minuta     2
Christensenella sp.     2
Chryseobacterium sp.     3
CIP 106922     3
CIP 109788     3
CIP 109839     2
CIP 110771     3
CIPP II     4
Citrobacter freundii     4
Citrobacter sp.     3
Cloacibacillus evryensis     2
Cloacibacillus porcorum     4
Cloacibacterium sp.     2
Clostridiaceae bacterium JC118     2
Clostridiales bacterium 1_7_47FAA     3
Clostridiales bacterium L2-14     3
Clostridioides difficile     4
Clostridium butyricum     9
Clostridium celatum     2
Clostridium clostridioforme     4
Clostridium leptum     4
Clostridium neonatale Bouvet et al. 2014     2
Clostridium paraputrificum     2
Clostridium perfringens     5
Clostridium sp.     7
Clostridium tertium     3
Clostridium ventriculi     2
Coccobacillus pfeifferi     6
Collinsella aerofaciens   1   3
Collinsella sp.     6
Collinsella tanakaei     2
Coprobacter fastidiosus     3
Coprobacter sp.     4
Coprococcus catus     5
Coprococcus comes     4
Coprococcus eutactus     6
Coprococcus sp.     5
Corynebacterium durum     2
Corynebacterium sp.     5
CRBIP 24.179     4
Cronobacter sakazakii     3
Cryptobacterium curtum     2
CSUR P3241     2
Cutibacterium sp.     3
Desulfomicrobium orale     2
Desulfovibrio desulfuricans     4
Desulfovibrio piger   12   3
Desulfovibrio sp.     4
Desulfovibrio vulgaris     2
Dialister invisus     5
Dialister pneumosintes     3
Dialister propionicifaciens   1  
Dialister sp.     5
Dielma fastidiosa   5  
Dolosigranulum pigrum     3
Dorea formicigenerans   61   6
Dorea longicatena   1   5
Dorea sp.     6
DSM 102344     2
DSM 103034     4
DSM 1135     2
DSM 14437     3
DSM 15606     4
DSM 16608     2
DSM 17055     4
DSM 19284     3
DSM 20284     4
DSM 21459     2
DSM 22759     3
DSM 22761     2
DSM 24301     3
DSM 26109     3
DSM 28989     3
DSM 39     3
DSM 3986     4
DSM 4782     2
DSM 7271     4
DSM 8340     3
Dysgonomonas capnocytophagoides     3
Dysgonomonas sp.     2
Effusibacillus pohliae     2
Eggerthella lenta   4   9
Eggerthella sp.     2
Eggerthia catenaformis     3
Eisenbergiella sp.     5
Eisenbergiella tayi   2   3
Emergencia sp.     6
Enorma massiliensis     4
Enorma sp.     2
Enterobacter hormaechei     2
Enterobacter oryzaendophyticus     3
Enterobacter sp.     3
Enterococcus asini     2
Enterococcus cecorum     2
Enterococcus faecalis     8
Enterococcus faecium     5
Enterococcus gallinarum     5
Enterococcus mundtii     2
Enterococcus sp.     2
Erysipelatoclostridium ramosum   8   5
Escherichia citrophila (Asai et al. 1957) Asai et al. 1962     2
Escherichia coli     23
Escherichia sp.     4
Escherichia/Shigella albertii     3
Eubacterium desmolans     2
Eubacterium oxidoreducens     2
Eubacterium oxidoreducens     3
Eubacterium ramulus     2
Eubacterium sp.     7
Eubacterium uniforme     3
Eubacterium ventriosum     2
Faecalibacterium prausnitzii   25   28
Faecalibacterium sp.     7
Faecalibacterium sp. canine oral taxon 147   11  
Faecalicoccus pleomorphus     3
Faecalitalea cylindroides     4
Filifactor alocis     2
Finegoldia magna   2   2
Flavibacterium sp.     2
Flavonifractor plautii   5   5
Flavonifractor sp.     6
Fournierella sp.     5
Fusicatenibacter saccharivorans   20   2
Fusobacterium mortiferum     2
Fusobacterium nucleatum     7
Fusobacterium periodonticum     2
Fusobacterium sp.     6
Fusobacterium ulcerans     2
Fusobacterium varium     3
Gardnerella vaginalis     4
Gemella asaccharolytica     2
Gemella bergeri     2
Gemella sp.     3
Gemmiger formicilis     3
Gordonibacter pamelaeae   2   5
Gordonibacter sp.     2
Gordonibacter urolithinfaciens     4
Granulicatella elegans     5
Granulicatella sp.     4
Haemophilus haemolyticus     2
Haemophilus parainfluenzae     7
Haemophilus pittmaniae     3
Haemophilus quentini Olsen et al. 2005     2
Haemophilus sp.     3
Haemophilus sputorum     2
Hafnia alvei     3
Helicobacter pylori     2
Holdemanella biformis     3
Holdemanella sp.     5
Holdemania filiformis   8   3
Holdemania sp.     4
Hungatella hathewayi     6
HUT 6613     2
IMSNU 11154     2
Intestinibacter bartlettii     3
Intestinimonas butyriciproducens     7
Intestinimonas sp.     3
JCM 1039     2
JCM 1093     4
JCM 1305     2
JCM 5829     2
JCM 5830     2
JCM 8722     5
JCM 8725     2
JCM 9978     4
Kingella denitrificans     3
Klebsiella ornithinolytica     3
Klebsiella pneumoniae     8
Klebsiella sp.     2
Kluyvera ascorbata     3
Kluyvera georgiana   11   3
Kytococcus sedentarius     5
Lachnoanaerobaculum sp.     4
Lachnoanaerobaculum umeaense     5
Lachnoclostridium sp.     2
Lachnospira pectinoschiza   22   3
Lachnospira sp.     6
Lachnospiraceae bacterium oral taxon 082     2
Lactobacillus acidophilus     4
Lactobacillus agilis     3
Lactobacillus amylolyticus     2
Lactobacillus curvatus     4
Lactobacillus delbrueckii     3
Lactobacillus equi     3
Lactobacillus fermentum     7
Lactobacillus gasseri     6
Lactobacillus ingluviei     2
Lactobacillus intestinalis     2
Lactobacillus johnsonii     3
Lactobacillus mucosae     5
Lactobacillus murinus     2
Lactobacillus paracasei     3
Lactobacillus reuteri     4
Lactobacillus rhamnosus     2
Lactobacillus rogosae     2
Lactobacillus saerimneri     2
Lactobacillus sakei     4
Lactobacillus salivarius     8
Lactobacillus sp.     4
Lactobacillus vaginalis     4
Lactococcus lactis     4
Lactococcus sp.     3
Lactonifactor longoviformis     4
Lautropia mirabilis     3
Leadbetterella byssophila     4
Leclercia adecarboxylata     2
Leclercia sp.     2
Leminorella grimontii     2
Leptotrichia sp.     6
Leucobacter sp.     2
Leuconostoc lactis     3
Leuconostoc mesenteroides     2
LMG:18984     3
LMG:2665     2
LMG:5290     3
LMG:5313     3
LMG:7884     2
LMG:7944     2
LMG:9496     4
Marvinbryantia sp.     3
Massilimicrobiota timonensis Tall et al.     2
Massilioclostridium sp.     3
Megamonas hypermegale     3
Megamonas sp.     2
Megasphaera elsdenii     2
Megasphaera micronuciformis     5
Megasphaera sp.     5
Merdibacter massiliensis     2
Methanobrevibacter smithii     8
Methanobrevibacter sp.     3
Methanomassiliicoccus luminyensis     2
Methanosphaera cuniculi     3
Methanosphaera stadtmanae     2
Micromonas sp. (in: Bacteria)     4
Mitsuokella jalaludinii     2
Mitsuokella sp.     3
Mogibacterium sp.     5
Moraxella osloensis     3
Morganella morganii     3
Murimonas intestini     2
MUTK 20     3
Mycoplasma hominis     3
NCTC 5224     3
Negativicoccus massiliensis Togo et al. 2016     3
Negativicoccus succinicivorans     3
Neglecta sp.     4
Neisseria cinerea     3
Neisseria flavescens     4
Neisseria meningitidis     4
Neisseria sp.     3
Nocardioides dubius     4
Odoribacter laneus     3
Odoribacter sp.     5
Odoribacter splanchnicus     5
Olsenella profusa     4
Olsenella sp.     5
Olsenella uli     4
Oribacterium sinus     3
Oribacterium sp.     5
Oscillibacter ruminantium     2
Oscillibacter sp.     6
Oscillibacter valericigenes     2
Ottowia sp.     3
Oxalobacter formigenes     4
Oxalobacter sp.     3
Paenibacillus sp.     2
Paeniclostridium sordellii     2
Parabacteroides chinchillae     2
Parabacteroides distasonis   2   10
Parabacteroides goldsteinii     3
Parabacteroides gordonii     3
Parabacteroides johnsonii     4
Parabacteroides merdae     6
Parabacteroides sp.     5
Paraburkholderia sp.     2
Paraclostridium bifermentans     3
Paraprevotella clara     3
Paraprevotella sp.     5
Paraprevotella xylaniphila     2
Parasutterella excrementihominis     2
Parasutterella sp.     4
Parvimonas micra     3
PCU:282     2
Pediococcus pentosaceus     2
Peptococcus niger     2
Peptoniphilus rhinitidis Kim et al. 2012     2
Peptoniphilus sp.     6
Peptostreptococcus anaerobius     4
Peptostreptococcus sp.     5
Peptostreptococcus stomatis     5
Phascolarctobacterium faecium   3  
Phascolarctobacterium faecium     6
Phascolarctobacterium sp.     5
Phocaeicola abscessus     2
Photobacterium damselae     2
Porphyromonas asaccharolytica     3
Porphyromonas bennonis   2   3
Porphyromonas cangingivalis     2
Porphyromonas catoniae     5
Porphyromonas endodontalis     4
Porphyromonas somerae     5
Porphyromonas sp.     5
Porphyromonas uenonis     3
Prevotella albensis     2
Prevotella amnii     3
Prevotella aurantiaca     3
Prevotella baroniae     3
Prevotella bergensis     2
Prevotella bivia     4
Prevotella buccae     3
Prevotella buccalis     3
Prevotella colorans     2
Prevotella copri     12
Prevotella corporis     3
Prevotella denticola     4
Prevotella histicola     6
Prevotella loescheii     3
Prevotella maculosa     4
Prevotella marshii     3
Prevotella melaninogenica     4
Prevotella micans     5
Prevotella multisaccharivorax     3
Prevotella nanceiensis     3
Prevotella nigrescens     4
Prevotella oralis     5
Prevotella oris     3
Prevotella oulorum     3
Prevotella pallens     3
Prevotella paludivivens     2
Prevotella pleuritidis     3
Prevotella saccharolytica     4
Prevotella shahii     3
Prevotella sp.     6
Prevotella stercorea     3
Prevotella timonensis     2
Prevotella veroralis     3
Propionibacterium sp.     3
Proteus mirabilis     3
Proteus vulgaris     4
Pseudoflavonifractor capillosus   5   7
Pseudoflavonifractor sp.     3
Pseudomonas aeruginosa group     3
Pseudomonas putida     2
Pseudopedobacter saltans     2
Pseudopropionibacterium sp.     3
Pseudoramibacter alactolyticus     4
Pseudoramibacter sp.     2
Psychrobacillus sp.     2
Pyramidobacter piscolens     3
Pyramidobacter sp.     2
Raoultella sp.     4
Rikenella microfusus     4
Robinsoniella peoriensis     2
Robinsoniella sp.     2
Romboutsia sp.     5
Roseburia faecis   17   4
Roseburia hominis     3
Roseburia intestinalis   7   4
Roseburia inulinivorans   3   8
Roseburia sp.     6
Rothia aeria     5
Rothia dentocariosa     6
Rothia mucilaginosa     4
Rothia sp.     4
Ruminiclostridium sp.     6
Ruminococcaceae bacterium D16     4
Ruminococcus albus     2
Ruminococcus bicirculans     2
Ruminococcus bromii     3
Ruminococcus callidus     3
Ruminococcus champanellensis     2
Ruminococcus gauvreauii     3
Ruminococcus lactaris     2
Ruminococcus sp.     8
Salmonella enterica     2
Sanguibacteroides justesenii Sydenham et al. 2015     4
Scardovia inopinata     4
Scardovia wiggsiae     4
Selenomonas artemidis     4
Selenomonas flueggei     2
Selenomonas sputigena     4
Shuttleworthia satelles     3
Siccibacter sp.     2
Slackia exigua     4
Slackia piriformis     2
Slackia sp.     2
Sneathia sanguinegens     2
Solobacterium moorei     3
Sphingobacterium sp.     2
Staphylococcus aureus     6
Staphylococcus capitis     3
Staphylococcus epidermidis albus     3
Staphylococcus pasteuri     3
Staphylococcus xylosus     3
Stenotrophomonas maltophilia     3
Stenotrophomonas maltophilia complex     2
Stomatobaculum longum     4
Streptococcus agalactiae     2
Streptococcus anginosus     4
Streptococcus australis     3
Streptococcus constellatus     3
Streptococcus cristatus     4
Streptococcus dysgalactiae     2
Streptococcus G418     7
Streptococcus intermedius     3
Streptococcus massiliensis     3
Streptococcus mitis     7
Streptococcus mutans     3
Streptococcus orisratti     2
Streptococcus parauberis     2
Streptococcus pneumoniae     4
Streptococcus pyogenes     2
Streptococcus salivarius     4
Streptococcus sanguinis     5
Streptococcus sobrinus     3
Streptococcus sp. 11aTha1   1  
Streptococcus sp. 2011_Oral_MS_A3   2  
Streptococcus thermophilus     6
Streptomyces cattleya     3
Subdoligranulum sp.     5
Subdoligranulum variabile   18   3
Succinatimonas hippei     2
Succinivibrio sp.     5
Sutterella sp.     7
Sutterella stercoricanis   4  
Sutterella wadsworthensis     6
Syntrophomonas sp.     2
Tannerella forsythia     3
Tannerella sp.     3
Terrisporobacter sp.     3
Thiocapsa marina     3
Trichococcus sp.     2
Turicibacter sanguinis     2
Tyzzerella nexilis     4
Tyzzerella sp.     5
Varibaculum sp.     3
Variovorax sp.     3
Veillonella atypica     4
Veillonella dispar     4
Veillonella montpellierensis     2
Veillonella parvula     4
Veillonella sp.     6
Vibrio jejuni     2
Victivallis vadensis     3
VPI 1550     2
VPI 5424     5
VPI 8617     3
Wolinella recta     5
Yersinia ruckeri     2
  strain 'Streptococcus oralis subsp. tigurinus'     3
Saccharomyces cerevisiae     2
  subclass Actinobacteridae   1  
  suborder Coriobacterineae   1  
  subphylum delta/epsilon subdivisions   1871   7835
  superphylum Bacteroidetes/Chlorobi group   1439   8890

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